Flavonoid biosynthetic pathway

Flavonoid biosynthetic pathway

Flavonoids are synthesized via the phenylpropanoid pathway. Phenylalanine ammonia lyase (PAL) catalyzes the conversion of phenylalanine to cinnamate. PAL also shows activity with converting tyrosine to p-coumarate, albeit to a lower efficiency. The cinnamate 4-hydroxylase (C4H) catalyzes the synthesis of p-hydroxycinnamate from cinnamate and 4-coumarate:CoA ligase (4CL) converts p-coumarate to its coenzyme-A ester, activating it for reaction with malonyl CoA. The flavonoid biosynthetic pathway starts with the condensation of one molecule of 4-coumaroyl-CoA and three molecules of malonyl-CoA, yielding naringenin chalcone. This reaction is carried out by the enzyme chalcone synthase (CHS). Chalcone is isomerised to a flavanone by the enzyme chalcone flavanone isomerase (CHI). From these central intermediates, the pathway diverges into several side branches, each resulting in a different class of flavonoids. Flavanone 3-hydroxylase (F3H) catalyzes the stereospecific 3ß-hydroxylation of (2S)-flavanones to dihydroflavonols. For the biosynthesis of anthocyanins, dihydroflavonol reductase (DFR) catalyzes the reduction of dihydroflavonols to flavan-3,4-diols (leucoanthocyanins), which are converted to anthocyanidins by anthocyanidin synthase (ANS). The formation of glucosides is catalyzed by UDP glucose-flavonoid 3-o-glucosyl transferase (UFGT), which stabilize the anthocyanidins by 3-O-glucosylation (Harborne 1994, Bohm 1998). The overview of the flavonoid pathway is presented in Fig 1B. There is evidence that the enzymes involved in flavonoid metabolism might be acting as membrane-associated multienzyme complexes, which has implications on the overall efficiency, specificity, and regulation of the pathway (Stafford 1991, Winkel-Shirley 1999, 2001).

Studies of the flavonoid pathway range from classical genetic analysis of flower color inheritance patterns by Mendel, through the establishment of their chemical structures, to efforts to understand the factors involved in their biochemical synthesis (Bohm 1998). Basic knowledge of the flavonoid biosynthesis was gained from experimental studies using radio-labeled precursors at the end of 1950’s. The development of more sophisticated methods in analytical chemistry and enzymology, and later in gene technology, has produced a vast number of studies and detailed information of the flavonoid biosynthesis in several plant species. The flavonoid biosynthetic pathway has been comprehensively reviewed (e.g. by Dooner & Robbins 1991, Koes et al. 1994, Holton & Cornish 1995, Molet al. 1998, Weisshaar & Jenkins 1998, Winkel-Shirley 2001).

The first gene isolated from the flavonoid biosynthetic pathway was a CHS gene from parsley (Petroselinum hortense) (Kreuzaler et al. 1983). Transcriptional control of the structural genes of the flavonoid biosynthetic pathway has been most intensively studied in relation to the biosynthesis of anthocyanins. Groundbreaking research concerning the expression of the structural and regulatory genes of the flavonoid pathway has been done with maize (Zea mays) (Goff et al. 1990, Taylor et al. 1990, Tonelli et al. 1991), arabidopsis (Arabidopsis thaliana) (Shirley et al. 1992) and with ornamental plants like snapdragon (Antirrhinum majus) (Martin et al.1991), petunia (van der Krol et al. 1988) and gerbera (Elomaa et al. 1993, Helariutta et al. 1993, 1995). Naturally occurring flavonoid mutants and variants, or genetically transformed mutant plants have been important tools in several investigations clarifying the functions of the flavonoid pathway genes (Shirley et al. 1995, Tanaka et al. 1998).

The expression of flavonoid pathway genes in fruit tissues has been studied on grape (Vitis vinifera) (Boss et al. 1996, Kobayashi et al. 2001), citrus (Citrus unshiu Marc.) (Moriguchi et al. 2001), and strawberry plants (Fragariaspp.) (Manning 1998, Aharoni et al. 2001). The scarcity of studies in this area may be due to a difficulty caused by the special features of the fruit tissues, e.g. the richness of different secondary metabolites and RNases, which may hinder the easy application of the molecular biological research methods.

Figure 1. A) The structures of selected flavonoid classes. B) A schematic presentation of the flavonoid biosynthetic pathway. Enzyme abbreviations: PAL, phenylalanine ammonia-lyase; C4H, cinnamate 4-hydroxylase; 4CL, 4-coumaroyl:CoA ligase; CHS, chalcone synthase; CHI, chalcone isomerase; F3H, flavanone 3-hydroxylase; DFR, dihydroflavonol 4-reductase; ANS, anthocyanidin synthase; UFGT, UDP glucose-flavonoid 3-o-glucosyl transferase.